Friday, January 16, 2015

Genome editing

http://www.nyas.org/Publications/Ebriefings/Detail.aspx?cid=3a2a4df7-9f5d-4547-97ef-e6d24d6b3b27

Thursday, January 15, 2015

Heredity of disease

http://www.nature.com/nature/journal/v421/n6921/fig_tab/nature01401_F1.html

Confocal pinhole setting

small pinhole: high resolution
pinhole > 1 airy unit: for weak signal only
e.g. pinhole= 0.5 airy unit works well for strong signal

http://depts.washington.edu/keck/leica/pinhole.htm

Sunday, July 20, 2014

How to change adobe text box property

To change property of the text box (border, fill color), select the text box: press CTRL+E 
To change property of the text  in side the text box (font, color), double click, select the text: press CTRL+E 

Friday, July 18, 2014

E. coli genotypes

http://openwetware.org/wiki/E._coli_genotypes#DH5.CE.B1

DH5α

F- endA1 glnV44 thi-1 recA1 relA1 gyrA96 deoR nupG Φ80dlacZΔM15 Δ(lacZYA-argF)U169, hsdR17(rK- mK+), λ–
  • An Hoffman-Berling 1100 strain derivative (Meselson68)
  • Promega also lists phoA
  • nalidixic acid resistant
  • References:
    • FOCUS (1986) 8:2, 9.
    • Hanahan, D. (1985) in DNA Cloning: A Practical Approach (Glover, D.M., ed.), Vol. 1, p. 109, IRL Press, McLean, Virginia.
    • Grant, S.G.N. et al. (1990) Proc. Natl. Acad. Sci. USA 87: 4645-4649 PMID 2162051.
    • Meselson M. and Yuan R. (1968) Nature 217:1110 PMID 4868368.


XL1-Blue 

endA1 gyrA96(nalR) thi-1 recA1 relA1 lac glnV44 F'[ ::Tn10 proAB+ lacIq Δ(lacZ)M15] hsdR17(rK- mK+)
  • nalidixic acid resistant
  • tetracycline resistant (carried on the F plasmid)

Monday, June 16, 2014

Genome sizes

This is a nice (and correct) one from Wikipedia. 

Also about animals with the smallest and largest genomes:
I have seen both some of the largest and smallest genomes among animals (well, I have seen stain bound to their DNA, at least). The largest report remains that of the marbled African lungfish, Protopterus aethiopicus, at a gigantic 132Gb (about 40 times more than humans). Some authors argue that this is an overestimate, but regardless they have huge genomes that are undoubtedly much, much larger than those of any mammal.
Until recently, the smallest animal genome size was reported to occur in some root-knot nematodes of the genus Meloidogyne (~ 30Mb) or perhaps in the placozoan Trichoplax adhaerens (~ 40Mb). I tended to have doubts about the nematode estimates because they were derived using older methodology. However, my colleague Serge Morand and his co-authors now report an even smaller genome in a plant-parasitic nematode based on estimates using modern flow cytometry techniques. In particular, the genome size of Pratylenchus coffeae is estimated at about 19Mb, making it the smallest so far found in a metazoan.

Tree of life (total gene number)

Look at this picture, how insignificant we are in the world of species!

Had fun trying this website: http://itol.embl.de/itol.cgi



Shoot... Spent so much time getting the pictures, just realized that the website was wrong about "genome size"! That's # of genes, not genome size... Thank god that I asked it to show the labels... Can these people please have a better idea about genome biology?! This picture is even on Wikipedia! That's very misleading!